Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LOC106939326RAB38c, member of RAS oncogene family. (206 aa)    
Predicted Functional Partners:
ENSPLAP00000019989
Uncharacterized protein.
    
 0.798
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.758
ENSPLAP00000015453
Uncharacterized protein.
    
 
 0.738
gak
Cyclin G associated kinase.
    
 
 0.722
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
    
 0.680
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
    
 0.589
LOC106942307
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.587
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.534
timm9
Translocase of inner mitochondrial membrane 9 homolog.
      
 0.508
LOC106953472
Rhotekin 2a.
      
 0.493
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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