Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
usp3Ubiquitin carboxyl-terminal hydrolase. (609 aa)    
Predicted Functional Partners:
LOC106938866
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.911
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.909
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.907
rps27a
Ribosomal protein S27a.
    
 0.893
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.867
sgf29
SAGA complex associated factor 29.
   
 0.866
ENSPLAP00000005771
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.852
snai2
Snail family zinc finger 2.
    
 
 0.839
supt3h
Uncharacterized protein.
    
 0.835
tada2b
Transcriptional adapter.
    
 0.826
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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