Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam118bFamily with sequence similarity 118 member B. (337 aa)    
Predicted Functional Partners:
LOC106956332
Si:dkey-106g10.7.
   
 0.871
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
    
   0.769
ints4
Integrator complex subunit 4.
    
 
 0.698
LOC106941835
Family with sequence similarity 219 member Ab.
      
 0.683
rhbdd3
Rhomboid domain containing 3.
    
 
 0.630
bbs9
Bardet-Biedl syndrome 9.
    
 0.579
LOC106947774
Receptor expression-enhancing protein.
    
 
 0.567
pld6
Phospholipase D family, member 6.
   
 0.567
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.564
THUMPD2
THUMP domain containing 2.
     
 0.546
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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