Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab8bMultiple EGF-like-domains 8. (207 aa)    
Predicted Functional Partners:
LOC106964769
Uncharacterized protein.
    
 0.947
ENSPLAP00000010048
Calponin-homology (CH) domain-containing protein.
    
 0.922
LOC106936164
RAB8A, member RAS oncogene family.
  
  
 
0.901
LOC106960962
Uncharacterized protein.
  
  
 
0.901
exoc5
Exocyst complex component 5.
   
 0.781
exoc4
Exocyst complex component 4.
    
 0.780
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.776
LOC106964665
RAB3A interacting protein (rabin3)-like 1.
    
 0.767
rab3ip
RAB3A interacting protein (rabin3).
    
 0.767
exoc1
Exocyst complex component 1.
    
 0.765
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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