STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhh2Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2. (1412 aa)    
Predicted Functional Partners:
plekhf2
Pleckstrin homology domain containing, family F (with FYVE domain) member 2.
      
 0.540
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.518
fam43a
Family with sequence similarity 43 member A.
      
 0.515
shisa3
Shisa family member 3.
      
 0.493
rfc3
Replication factor C (activator 1) 3.
   
  
 0.493
ENSPLAP00000018306
Sorting nexin 29.
      
 0.483
LOC106934773
TOX high mobility group box family member 4 a.
      
 0.478
zfyve26
Zinc finger, FYVE domain containing 26.
      
 0.418
brca2
BRCA2 DNA repair associated.
      
 0.406
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.