LOC106960672 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106960672

Nucleic acid binding protein 1a. (221 aa)

Predicted Functional Partners:

ints3

0.961

ints1

0.942

ints5

0.941

sage1

0.822

ints6

0.822

INIP

0.775

ENSPLAP00000029674

0.775

ints9

0.760

ints11

0.754

ints12

0.680

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000029674	LOC106960672	ENSPLAP00000029674	ENSPLAP00000005504	Ints3 and nabp interacting protein.	Nucleic acid binding protein 1a.	0.775
ENSPLAP00000029674	ints3	ENSPLAP00000029674	ENSPLAP00000004633	Ints3 and nabp interacting protein.	Integrator complex subunit 3.	0.963
INIP	LOC106960672	ENSPLAP00000005360	ENSPLAP00000005504	INTS3 and NABP interacting protein.	Nucleic acid binding protein 1a.	0.775
INIP	ints3	ENSPLAP00000005360	ENSPLAP00000004633	INTS3 and NABP interacting protein.	Integrator complex subunit 3.	0.963
LOC106960672	ENSPLAP00000029674	ENSPLAP00000005504	ENSPLAP00000029674	Nucleic acid binding protein 1a.	Ints3 and nabp interacting protein.	0.775
LOC106960672	INIP	ENSPLAP00000005504	ENSPLAP00000005360	Nucleic acid binding protein 1a.	INTS3 and NABP interacting protein.	0.775
LOC106960672	ints1	ENSPLAP00000005504	ENSPLAP00000009933	Nucleic acid binding protein 1a.	Integrator complex subunit 1.	0.942
LOC106960672	ints11	ENSPLAP00000005504	ENSPLAP00000029213	Nucleic acid binding protein 1a.	Integrator complex subunit 11.	0.754
LOC106960672	ints12	ENSPLAP00000005504	ENSPLAP00000009421	Nucleic acid binding protein 1a.	Integrator complex subunit 12.	0.680
LOC106960672	ints3	ENSPLAP00000005504	ENSPLAP00000004633	Nucleic acid binding protein 1a.	Integrator complex subunit 3.	0.961
LOC106960672	ints5	ENSPLAP00000005504	ENSPLAP00000018810	Nucleic acid binding protein 1a.	Integrator complex subunit 5.	0.941
LOC106960672	ints6	ENSPLAP00000005504	ENSPLAP00000024465	Nucleic acid binding protein 1a.	Integrator complex subunit 6.	0.822
LOC106960672	ints9	ENSPLAP00000005504	ENSPLAP00000016365	Nucleic acid binding protein 1a.	Integrator complex subunit 9.	0.760
LOC106960672	sage1	ENSPLAP00000005504	ENSPLAP00000000155	Nucleic acid binding protein 1a.	Integrator complex subunit 6 like.	0.822
ints1	LOC106960672	ENSPLAP00000009933	ENSPLAP00000005504	Integrator complex subunit 1.	Nucleic acid binding protein 1a.	0.942
ints1	ints11	ENSPLAP00000009933	ENSPLAP00000029213	Integrator complex subunit 1.	Integrator complex subunit 11.	0.999
ints1	ints12	ENSPLAP00000009933	ENSPLAP00000009421	Integrator complex subunit 1.	Integrator complex subunit 12.	0.995
ints1	ints3	ENSPLAP00000009933	ENSPLAP00000004633	Integrator complex subunit 1.	Integrator complex subunit 3.	0.999
ints1	ints5	ENSPLAP00000009933	ENSPLAP00000018810	Integrator complex subunit 1.	Integrator complex subunit 5.	0.999
ints1	ints6	ENSPLAP00000009933	ENSPLAP00000024465	Integrator complex subunit 1.	Integrator complex subunit 6.	0.940