STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106962657Rhomboid domain-containing protein. (357 aa)    
Predicted Functional Partners:
LOC106944828
YME1-like 1b; Belongs to the AAA ATPase family.
  
 
 0.739
yme1l1
YME1-like 1a.
  
 
 0.739
stoml2
Stomatin (EPB72)-like 2.
  
 0.732
pink1
PTEN induced kinase 1.
    
 
 0.644
LOC106938668
Prohibitin.
  
 0.639
phb2
Prohibitin.
  
 0.639
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
 0.578
opa1
OPA1 mitochondrial dynamin like GTPase; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
 0.575
phb
Prohibitin.
  
 0.546
LOC106943554
Peptidase_M48 domain-containing protein.
   
 
 0.538
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.