rgs12 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rgs12

Regulator of G protein signaling 12b. (1390 aa)

Predicted Functional Partners:

ENSPLAP00000008549

0.747

apc2

0.747

LOC106955687

0.695

gsk3b

0.695

LOC106961276

0.695

ENSPLAP00000021328

0.695

rgs3

0.663

LOC106946560

0.658

LOC106949452

0.658

ripk4

0.651

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000008549	ENSPLAP00000021328	ENSPLAP00000008549	ENSPLAP00000021328	APC_N_CC domain-containing protein.	Uncharacterized protein.	0.877
ENSPLAP00000008549	LOC106955687	ENSPLAP00000008549	ENSPLAP00000015473	APC_N_CC domain-containing protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.877
ENSPLAP00000008549	LOC106961276	ENSPLAP00000008549	ENSPLAP00000019535	APC_N_CC domain-containing protein.	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.	0.877
ENSPLAP00000008549	gsk3b	ENSPLAP00000008549	ENSPLAP00000016984	APC_N_CC domain-containing protein.	Glycogen synthase kinase 3 beta, genome duplicate a; Belongs to the protein kinase superfamily.	0.877
ENSPLAP00000008549	rgs12	ENSPLAP00000008549	ENSPLAP00000005650	APC_N_CC domain-containing protein.	Regulator of G protein signaling 12b.	0.747
ENSPLAP00000008549	rgs3	ENSPLAP00000008549	ENSPLAP00000001359	APC_N_CC domain-containing protein.	Si:ch211-154e10.1.	0.719
ENSPLAP00000008549	ripk4	ENSPLAP00000008549	ENSPLAP00000027496	APC_N_CC domain-containing protein.	Receptor-interacting serine-threonine kinase 4.	0.664
ENSPLAP00000021328	ENSPLAP00000008549	ENSPLAP00000021328	ENSPLAP00000008549	Uncharacterized protein.	APC_N_CC domain-containing protein.	0.877
ENSPLAP00000021328	apc2	ENSPLAP00000021328	ENSPLAP00000017180	Uncharacterized protein.	APC regulator of WNT signaling pathway 2.	0.877
ENSPLAP00000021328	rgs12	ENSPLAP00000021328	ENSPLAP00000005650	Uncharacterized protein.	Regulator of G protein signaling 12b.	0.695
ENSPLAP00000021328	rgs3	ENSPLAP00000021328	ENSPLAP00000001359	Uncharacterized protein.	Si:ch211-154e10.1.	0.707
LOC106946560	LOC106949452	ENSPLAP00000002077	ENSPLAP00000030094	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.966
LOC106946560	rgs12	ENSPLAP00000002077	ENSPLAP00000005650	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Regulator of G protein signaling 12b.	0.658
LOC106946560	rgs3	ENSPLAP00000002077	ENSPLAP00000001359	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Si:ch211-154e10.1.	0.776
LOC106946560	ripk4	ENSPLAP00000002077	ENSPLAP00000027496	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Receptor-interacting serine-threonine kinase 4.	0.440
LOC106949452	LOC106946560	ENSPLAP00000030094	ENSPLAP00000002077	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.966
LOC106949452	rgs12	ENSPLAP00000030094	ENSPLAP00000005650	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Regulator of G protein signaling 12b.	0.658
LOC106949452	rgs3	ENSPLAP00000030094	ENSPLAP00000001359	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Si:ch211-154e10.1.	0.776
LOC106949452	ripk4	ENSPLAP00000030094	ENSPLAP00000027496	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Receptor-interacting serine-threonine kinase 4.	0.440
LOC106955687	ENSPLAP00000008549	ENSPLAP00000015473	ENSPLAP00000008549	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	APC_N_CC domain-containing protein.	0.877