STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoh7Atonal bHLH transcription factor 7. (144 aa)    
Predicted Functional Partners:
LOC106959275
Transcription factor 3b.
    
 
 0.564
LOC106958149
BHLH domain-containing protein.
    
 
 0.564
tcf12
Transcription factor 12.
    
 
 0.564
ENSPLAP00000010677
Uncharacterized protein.
    
 
 0.564
TCF4
Transcription factor 4.
    
 
 0.564
ENSPLAP00000018665
annotation not available
    
 
 0.564
ENSPLAP00000024078
annotation not available
    
 
 0.564
ENSPLAP00000027438
Uncharacterized protein.
    
 
 0.564
ptf1a
Pancreas associated transcription factor 1a.
   
 
0.440
ENSPLAP00000020612
Achaete-scute family bHLH transcription factor 1b.
   
 
0.420
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.