Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atoh7Atonal bHLH transcription factor 7. (144 aa)    
Predicted Functional Partners:
ptf1a
Pancreas associated transcription factor 1a.
    
 
 0.695
nthl1
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
      
 0.571
LOC106959275
Transcription factor 3b.
    
 
 0.555
LOC106958149
BHLH domain-containing protein.
    
 
 0.555
tcf12
Transcription factor 12.
    
 
 0.555
ENSPLAP00000010677
Uncharacterized protein.
    
 
 0.555
TCF4
Transcription factor 4.
    
 
 0.555
ENSPLAP00000018665
annotation not available
    
 
 0.555
ENSPLAP00000024078
annotation not available
    
 
 0.555
ENSPLAP00000027438
Uncharacterized protein.
    
 
 0.555
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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