Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pkd2l1Polycystic kidney disease 2-like 1. (756 aa)    
Predicted Functional Partners:
LOC106941608
Polycystic kidney disease 1a.
   
 0.981
ENSPLAP00000002859
PLAT domain-containing protein.
    
 
 0.890
exoc5
Exocyst complex component 5.
     
 0.785
LOC106953549
Rhodopsin.
     
 0.727
LOC106953547
Rhodopsin.
     
 0.727
ENSPLAP00000014227
Uncharacterized protein.
    
 
 0.694
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.694
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
  
 0.689
ENSPLAP00000029744
Urotensin-related peptide 1.
      
 0.686
trpm5
Transient receptor potential cation channel, subfamily M, member 5.
      
 0.683
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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