ube3c protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106937893	LOC106959157	ENSPLAP00000003355	ENSPLAP00000006241	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 4a.	0.900
LOC106937893	adrm1	ENSPLAP00000003355	ENSPLAP00000003632	Proteasome 26S subunit, non-ATPase 4b.	RPN13_C domain-containing protein.	0.997
LOC106937893	psma1	ENSPLAP00000003355	ENSPLAP00000011577	Proteasome 26S subunit, non-ATPase 4b.	Proteasome subunit alpha type.	0.994
LOC106937893	psmc5	ENSPLAP00000003355	ENSPLAP00000024901	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.997
LOC106937893	psmd14	ENSPLAP00000003355	ENSPLAP00000026204	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 14.	0.998
LOC106937893	psmd2	ENSPLAP00000003355	ENSPLAP00000000329	Proteasome 26S subunit, non-ATPase 4b.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.998
LOC106937893	psmd6	ENSPLAP00000003355	ENSPLAP00000006180	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, non-ATPase 6.	0.999
LOC106937893	trip12	ENSPLAP00000003355	ENSPLAP00000009345	Proteasome 26S subunit, non-ATPase 4b.	Thyroid hormone receptor interactor 12.	0.641
LOC106937893	ube3c	ENSPLAP00000003355	ENSPLAP00000005754	Proteasome 26S subunit, non-ATPase 4b.	Ubiquitin protein ligase E3C.	0.913
LOC106937893	usp14	ENSPLAP00000003355	ENSPLAP00000015706	Proteasome 26S subunit, non-ATPase 4b.	Ubiquitin carboxyl-terminal hydrolase.	0.985
LOC106959157	LOC106937893	ENSPLAP00000006241	ENSPLAP00000003355	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 4b.	0.900
LOC106959157	adrm1	ENSPLAP00000006241	ENSPLAP00000003632	Proteasome 26S subunit, non-ATPase 4a.	RPN13_C domain-containing protein.	0.997
LOC106959157	psma1	ENSPLAP00000006241	ENSPLAP00000011577	Proteasome 26S subunit, non-ATPase 4a.	Proteasome subunit alpha type.	0.994
LOC106959157	psmc5	ENSPLAP00000006241	ENSPLAP00000024901	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.997
LOC106959157	psmd14	ENSPLAP00000006241	ENSPLAP00000026204	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 14.	0.998
LOC106959157	psmd2	ENSPLAP00000006241	ENSPLAP00000000329	Proteasome 26S subunit, non-ATPase 4a.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.998
LOC106959157	psmd6	ENSPLAP00000006241	ENSPLAP00000006180	Proteasome 26S subunit, non-ATPase 4a.	Proteasome 26S subunit, non-ATPase 6.	0.999
LOC106959157	trip12	ENSPLAP00000006241	ENSPLAP00000009345	Proteasome 26S subunit, non-ATPase 4a.	Thyroid hormone receptor interactor 12.	0.641
LOC106959157	ube3c	ENSPLAP00000006241	ENSPLAP00000005754	Proteasome 26S subunit, non-ATPase 4a.	Ubiquitin protein ligase E3C.	0.913
LOC106959157	usp14	ENSPLAP00000006241	ENSPLAP00000015706	Proteasome 26S subunit, non-ATPase 4a.	Ubiquitin carboxyl-terminal hydrolase.	0.985