fam174c protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fam174c

Si:ch211-262i1.6. (139 aa)

Predicted Functional Partners:

met

0.680

LOC106949456

0.680

mst1r

0.680

nck1

0.613

nck2

0.613

ENSPLAP00000029102

0.522

rbis

0.512

ENSPLAP00000016759

0.502

ENSPLAP00000027424

0.465

LOC106934486

0.429

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000016759	ENSPLAP00000029102	ENSPLAP00000016759	ENSPLAP00000029102	Nerve growth factor receptor a (TNFR superfamily, member 16).	Uncharacterized protein.	0.853
ENSPLAP00000016759	LOC106934486	ENSPLAP00000016759	ENSPLAP00000004490	Nerve growth factor receptor a (TNFR superfamily, member 16).	Receptor protein-tyrosine kinase.	0.491
ENSPLAP00000016759	LOC106949456	ENSPLAP00000016759	ENSPLAP00000030032	Nerve growth factor receptor a (TNFR superfamily, member 16).	Macrophage stimulating 1 receptor a.	0.523
ENSPLAP00000016759	fam174c	ENSPLAP00000016759	ENSPLAP00000005836	Nerve growth factor receptor a (TNFR superfamily, member 16).	Si:ch211-262i1.6.	0.502
ENSPLAP00000016759	met	ENSPLAP00000016759	ENSPLAP00000026056	Nerve growth factor receptor a (TNFR superfamily, member 16).	MET proto-oncogene, receptor tyrosine kinase.	0.523
ENSPLAP00000016759	mst1r	ENSPLAP00000016759	ENSPLAP00000030460	Nerve growth factor receptor a (TNFR superfamily, member 16).	Macrophage stimulating 1 receptor b.	0.523
ENSPLAP00000027424	fam174c	ENSPLAP00000027424	ENSPLAP00000005836	WD repeat domain 18.	Si:ch211-262i1.6.	0.465
ENSPLAP00000027424	rbis	ENSPLAP00000027424	ENSPLAP00000007728	WD repeat domain 18.	Si:ch211-282b22.1.	0.416
ENSPLAP00000029102	ENSPLAP00000016759	ENSPLAP00000029102	ENSPLAP00000016759	Uncharacterized protein.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.853
ENSPLAP00000029102	LOC106934486	ENSPLAP00000029102	ENSPLAP00000004490	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.410
ENSPLAP00000029102	fam174c	ENSPLAP00000029102	ENSPLAP00000005836	Uncharacterized protein.	Si:ch211-262i1.6.	0.522
ENSPLAP00000029102	nck1	ENSPLAP00000029102	ENSPLAP00000010429	Uncharacterized protein.	Cytoplasmic protein.	0.443
ENSPLAP00000029102	nck2	ENSPLAP00000029102	ENSPLAP00000030523	Uncharacterized protein.	Cytoplasmic protein.	0.443
LOC106934486	ENSPLAP00000016759	ENSPLAP00000004490	ENSPLAP00000016759	Receptor protein-tyrosine kinase.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.491
LOC106934486	ENSPLAP00000029102	ENSPLAP00000004490	ENSPLAP00000029102	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.410
LOC106934486	LOC106949456	ENSPLAP00000004490	ENSPLAP00000030032	Receptor protein-tyrosine kinase.	Macrophage stimulating 1 receptor a.	0.888
LOC106934486	fam174c	ENSPLAP00000004490	ENSPLAP00000005836	Receptor protein-tyrosine kinase.	Si:ch211-262i1.6.	0.429
LOC106934486	met	ENSPLAP00000004490	ENSPLAP00000026056	Receptor protein-tyrosine kinase.	MET proto-oncogene, receptor tyrosine kinase.	0.892
LOC106934486	mst1r	ENSPLAP00000004490	ENSPLAP00000030460	Receptor protein-tyrosine kinase.	Macrophage stimulating 1 receptor b.	0.888
LOC106934486	nck1	ENSPLAP00000004490	ENSPLAP00000010429	Receptor protein-tyrosine kinase.	Cytoplasmic protein.	0.454