ENSPLAP00000005873 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000005873

Uncharacterized protein. (305 aa)

Predicted Functional Partners:

siae

0.751

mgll

0.660

rtraf

0.622

ddx1

0.621

rtcb

0.603

FIG4

0.596

man2b1

0.571

LOC106938407

0.571

man2b2

0.571

LOC106956020

0.557

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000005873	FIG4	ENSPLAP00000005873	ENSPLAP00000012742	Uncharacterized protein.	FIG4 phosphoinositide 5-phosphatase.	0.596
ENSPLAP00000005873	LOC106938407	ENSPLAP00000005873	ENSPLAP00000013141	Uncharacterized protein.	Glyco_hydro_38N domain-containing protein.	0.571
ENSPLAP00000005873	LOC106956020	ENSPLAP00000005873	ENSPLAP00000018207	Uncharacterized protein.	Abhydrolase domain containing 6.	0.557
ENSPLAP00000005873	ddx1	ENSPLAP00000005873	ENSPLAP00000021816	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	0.621
ENSPLAP00000005873	man2b1	ENSPLAP00000005873	ENSPLAP00000008744	Uncharacterized protein.	Alpha-mannosidase.	0.571
ENSPLAP00000005873	man2b2	ENSPLAP00000005873	ENSPLAP00000020224	Uncharacterized protein.	Alpha-mannosidase.	0.571
ENSPLAP00000005873	mgll	ENSPLAP00000005873	ENSPLAP00000017787	Uncharacterized protein.	Monoglyceride lipase.	0.660
ENSPLAP00000005873	rtcb	ENSPLAP00000005873	ENSPLAP00000014061	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.603
ENSPLAP00000005873	rtraf	ENSPLAP00000005873	ENSPLAP00000007229	Uncharacterized protein.	RNA transcription, translation and transport factor.	0.622
ENSPLAP00000005873	siae	ENSPLAP00000005873	ENSPLAP00000019270	Uncharacterized protein.	Sialic acid acetylesterase.	0.751
FIG4	ENSPLAP00000005873	ENSPLAP00000012742	ENSPLAP00000005873	FIG4 phosphoinositide 5-phosphatase.	Uncharacterized protein.	0.596
LOC106938407	ENSPLAP00000005873	ENSPLAP00000013141	ENSPLAP00000005873	Glyco_hydro_38N domain-containing protein.	Uncharacterized protein.	0.571
LOC106938407	siae	ENSPLAP00000013141	ENSPLAP00000019270	Glyco_hydro_38N domain-containing protein.	Sialic acid acetylesterase.	0.704
LOC106956020	ENSPLAP00000005873	ENSPLAP00000018207	ENSPLAP00000005873	Abhydrolase domain containing 6.	Uncharacterized protein.	0.557
LOC106956020	mgll	ENSPLAP00000018207	ENSPLAP00000017787	Abhydrolase domain containing 6.	Monoglyceride lipase.	0.746
ddx1	ENSPLAP00000005873	ENSPLAP00000021816	ENSPLAP00000005873	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	Uncharacterized protein.	0.621
ddx1	rtcb	ENSPLAP00000021816	ENSPLAP00000014061	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.998
ddx1	rtraf	ENSPLAP00000021816	ENSPLAP00000007229	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	RNA transcription, translation and transport factor.	0.995
man2b1	ENSPLAP00000005873	ENSPLAP00000008744	ENSPLAP00000005873	Alpha-mannosidase.	Uncharacterized protein.	0.571
man2b1	man2b2	ENSPLAP00000008744	ENSPLAP00000020224	Alpha-mannosidase.	Alpha-mannosidase.	0.900