STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef1Rho guanine nucleotide exchange factor (GEF) 1b. (983 aa)    
Predicted Functional Partners:
LOC106952122
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.983
LOC106939093
Uncharacterized protein.
    
 0.983
LOC106960220
Uncharacterized protein.
   
 0.980
LOC106962714
Uncharacterized protein.
   
 0.974
ENSPLAP00000020748
Uncharacterized protein.
    
 0.971
LOC106965113
Uncharacterized protein.
   
 0.966
LOC106960333
Uncharacterized protein.
   
 0.966
arhgef6
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.
    
 0.959
LOC106959654
Uncharacterized protein.
   
 0.953
arhgef7
Rho guanine nucleotide exchange factor (GEF) 7b.
    
 0.919
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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