Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc28Leucine rich repeat containing 28. (366 aa)    
Predicted Functional Partners:
traf7
TNF receptor-associated factor 7.
   
 0.645
LOC106964148
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.641
LOC106936770
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.593
ENSPLAP00000022509
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.593
gak
Cyclin G associated kinase.
    
 0.583
tnfaip6
Tumor necrosis factor, alpha-induced protein 6.
    
 0.577
LOC106963016
Glycerol-3-phosphate dehydrogenase [NAD(+)].
    
  0.576
LOC106940660
Glycerol-3-phosphate dehydrogenase [NAD(+)].
    
  0.576
gpd1
Glycerol-3-phosphate dehydrogenase [NAD(+)].
    
  0.576
lrrc20
Leucine rich repeat containing 20.
  
 
  0.548
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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