lrrc28 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lrrc28

Leucine rich repeat containing 28. (366 aa)

Predicted Functional Partners:

traf7

0.816

LOC106945532

0.756

LOC106936770

0.746

ENSPLAP00000022509

0.746

tm9sf1

0.731

LOC106952860

0.674

LOC106954136

0.655

ENSPLAP00000017806

0.655

ENSPLAP00000030866

0.655

ENSPLAP00000030875

0.655

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000017806	ENSPLAP00000030866	ENSPLAP00000017806	ENSPLAP00000030866	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSPLAP00000017806	ENSPLAP00000030875	ENSPLAP00000017806	ENSPLAP00000030875	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPLAP00000017806	LOC106945532	ENSPLAP00000017806	ENSPLAP00000028558	Uncharacterized protein.	Si:ch73-335l21.4.	0.434
ENSPLAP00000017806	LOC106954136	ENSPLAP00000017806	ENSPLAP00000012841	Uncharacterized protein.	Intersectin 2b.	0.993
ENSPLAP00000017806	lrrc28	ENSPLAP00000017806	ENSPLAP00000005909	Uncharacterized protein.	Leucine rich repeat containing 28.	0.655
ENSPLAP00000022509	LOC106936770	ENSPLAP00000022509	ENSPLAP00000017273	Mindbomb E3 ubiquitin protein ligase 2.	Mindbomb E3 ubiquitin protein ligase 2.	0.529
ENSPLAP00000022509	LOC106945532	ENSPLAP00000022509	ENSPLAP00000028558	Mindbomb E3 ubiquitin protein ligase 2.	Si:ch73-335l21.4.	0.863
ENSPLAP00000022509	LOC106952860	ENSPLAP00000022509	ENSPLAP00000004148	Mindbomb E3 ubiquitin protein ligase 2.	Ubiquitin-conjugating enzyme E2 variant 1.	0.580
ENSPLAP00000022509	lrrc28	ENSPLAP00000022509	ENSPLAP00000005909	Mindbomb E3 ubiquitin protein ligase 2.	Leucine rich repeat containing 28.	0.746
ENSPLAP00000022509	traf7	ENSPLAP00000022509	ENSPLAP00000005598	Mindbomb E3 ubiquitin protein ligase 2.	TNF receptor-associated factor 7.	0.924
ENSPLAP00000030866	ENSPLAP00000017806	ENSPLAP00000030866	ENSPLAP00000017806	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSPLAP00000030866	ENSPLAP00000030875	ENSPLAP00000030866	ENSPLAP00000030875	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSPLAP00000030866	LOC106945532	ENSPLAP00000030866	ENSPLAP00000028558	Uncharacterized protein.	Si:ch73-335l21.4.	0.434
ENSPLAP00000030866	LOC106954136	ENSPLAP00000030866	ENSPLAP00000012841	Uncharacterized protein.	Intersectin 2b.	0.993
ENSPLAP00000030866	lrrc28	ENSPLAP00000030866	ENSPLAP00000005909	Uncharacterized protein.	Leucine rich repeat containing 28.	0.655
ENSPLAP00000030875	ENSPLAP00000017806	ENSPLAP00000030875	ENSPLAP00000017806	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPLAP00000030875	ENSPLAP00000030866	ENSPLAP00000030875	ENSPLAP00000030866	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSPLAP00000030875	LOC106945532	ENSPLAP00000030875	ENSPLAP00000028558	Uncharacterized protein.	Si:ch73-335l21.4.	0.434
ENSPLAP00000030875	LOC106954136	ENSPLAP00000030875	ENSPLAP00000012841	Uncharacterized protein.	Intersectin 2b.	0.993
ENSPLAP00000030875	lrrc28	ENSPLAP00000030875	ENSPLAP00000005909	Uncharacterized protein.	Leucine rich repeat containing 28.	0.655