STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (405 aa)    
Predicted Functional Partners:
ptch1
Patched 1.
   
 0.992
hhip
Hedgehog interacting protein.
    
 0.989
ENSPLAP00000013496
Uncharacterized protein.
   
 0.981
ptch2
Patched 2.
   
 0.981
cdon
Cell adhesion associated, oncogene regulated.
    
 0.980
boc
BOC cell adhesion associated, oncogene regulated.
    
 0.979
disp1
Dispatched homolog 1 (Drosophila).
   
 0.954
LOC106960571
Uncharacterized protein.
    
 0.946
LOC106955673
Growth arrest-specific 1a.
    
 0.942
ENSPLAP00000012867
Growth arrest-specific 1b.
    
 0.932
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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