STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106951777Uncharacterized protein. (252 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.719
TENT4A
Terminal nucleotidyltransferase 4A.
   
 
 0.601
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.601
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.601
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.487
mrpl16
Mitochondrial ribosomal protein L16.
   
  0.471
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.458
rpl10
Ribosomal protein L10.
   
  0.457
gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.447
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 
 0.445
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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