STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106941757Family with sequence similarity 151 member B. (257 aa)    
Predicted Functional Partners:
lingo3
Ig-like domain-containing protein.
    
 
 0.727
ENSPLAP00000024189
Ig-like domain-containing protein.
    
 
 0.727
LOC106950814
L1 cell adhesion molecule, paralog a.
   
 
 0.700
LOC106952236
Triosephosphate isomerase.
      
 0.551
nubp2
Cytosolic Fe-S cluster assembly factor NUBP2; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP2/CFD1 subfamily.
      
 0.550
casz1
Castor zinc finger 1.
      
 0.502
LOC106935670
Zinc finger, FYVE domain containing 16.
      
 0.489
LOC106938645
Zinc finger, FYVE domain containing 9a.
      
 0.489
ENSPLAP00000003731
Leucine rich repeat containing 4Ba.
    
 
 0.444
ENSPLAP00000006120
Vasorin b.
    
 
 0.444
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.