STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106943015RH2 domain-containing protein. (244 aa)    
Predicted Functional Partners:
RAB39B
RAB39B, member RAS oncogene family.
    
 0.657
rab12
RAB12, member RAS oncogene family.
    
 0.620
rab28
Uncharacterized protein.
    
 0.613
LOC106958411
Uncharacterized protein.
    
 0.612
rab7a
RAB7a, member RAS oncogene family.
    
 0.612
LOC106950647
EF-hand domain-containing protein.
    
 0.594
cracr2b
Calcium release activated channel regulator 2B.
    
 0.594
LOC106964773
Calcium release activated channel regulator 2Ab.
    
 0.594
LOC106945228
RAB10, member RAS oncogene family.
    
 0.575
LOC106936164
RAB8A, member RAS oncogene family.
    
 0.575
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.