STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000006150GSAP-16 domain-containing protein. (168 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.977
nbr1
NBR1 autophagy cargo receptor a.
    
 0.969
ENSPLAP00000024276
Protein kinase domain-containing protein.
    
 0.926
prkcz
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.926
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 0.925
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.925
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.896
rps27a
Ribosomal protein S27a.
   
 0.884
LOC106949313
GABA type A receptor associated protein like 2.
   
 0.881
gabarapl2
GABA(A) receptor-associated protein like 2.
   
 0.881
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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