STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000006264Uncharacterized protein. (378 aa)    
Predicted Functional Partners:
LOC106945532
Si:ch73-335l21.4.
   
 0.670
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.640
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.629
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.624
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.616
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.616
LOC106965067
Growth arrest-specific 7a.
    
  0.599
gas7
Growth arrest specific 7.
    
  0.599
LOC106962210
Uncharacterized protein.
  
 
  0.595
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.586
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.