Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LTBP3Latent transforming growth factor beta binding protein 3. (1235 aa)    
Predicted Functional Partners:
LOC106947507
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.926
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.730
LOC106949081
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.730
mef2c
Myocyte enhancer factor 2cb.
    
 
 0.693
myl7
Myosin, light chain 7, regulatory.
    
 
 0.671
tgfb2
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.663
LOC106936703
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.663
pcnx3
Pecanex 3.
    
 
 0.662
prrx1
Paired related homeobox 1a.
    
 
 0.587
col6a1
Collagen, type VI, alpha 1.
   
 0.587
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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