trmu protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trmu

tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (416 aa)

Predicted Functional Partners:

gtpbp3

0.944

mto1

0.932

trmt12

0.857

rfk

0.856

ucn

0.853

ergic3

0.801

ergic1

0.801

LOC106956598

0.801

LOC106957553

0.801

nfs1

0.774

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106956598	ergic3	ENSPLAP00000021728	ENSPLAP00000001881	ERGIC and golgi 2.	ERGIC and golgi 3.	0.954
LOC106956598	gtpbp3	ENSPLAP00000021728	ENSPLAP00000004493	ERGIC and golgi 2.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.965
LOC106956598	trmu	ENSPLAP00000021728	ENSPLAP00000006301	ERGIC and golgi 2.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.801
LOC106957553	ergic3	ENSPLAP00000027116	ENSPLAP00000001881	Uncharacterized protein.	ERGIC and golgi 3.	0.954
LOC106957553	gtpbp3	ENSPLAP00000027116	ENSPLAP00000004493	Uncharacterized protein.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.965
LOC106957553	trmu	ENSPLAP00000027116	ENSPLAP00000006301	Uncharacterized protein.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.801
ergic1	ergic3	ENSPLAP00000008735	ENSPLAP00000001881	Endoplasmic reticulum-golgi intermediate compartment 1.	ERGIC and golgi 3.	0.874
ergic1	gtpbp3	ENSPLAP00000008735	ENSPLAP00000004493	Endoplasmic reticulum-golgi intermediate compartment 1.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.965
ergic1	trmu	ENSPLAP00000008735	ENSPLAP00000006301	Endoplasmic reticulum-golgi intermediate compartment 1.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.801
ergic3	LOC106956598	ENSPLAP00000001881	ENSPLAP00000021728	ERGIC and golgi 3.	ERGIC and golgi 2.	0.954
ergic3	LOC106957553	ENSPLAP00000001881	ENSPLAP00000027116	ERGIC and golgi 3.	Uncharacterized protein.	0.954
ergic3	ergic1	ENSPLAP00000001881	ENSPLAP00000008735	ERGIC and golgi 3.	Endoplasmic reticulum-golgi intermediate compartment 1.	0.874
ergic3	gtpbp3	ENSPLAP00000001881	ENSPLAP00000004493	ERGIC and golgi 3.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.965
ergic3	trmu	ENSPLAP00000001881	ENSPLAP00000006301	ERGIC and golgi 3.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.801
gtpbp3	LOC106956598	ENSPLAP00000004493	ENSPLAP00000021728	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	ERGIC and golgi 2.	0.965
gtpbp3	LOC106957553	ENSPLAP00000004493	ENSPLAP00000027116	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Uncharacterized protein.	0.965
gtpbp3	ergic1	ENSPLAP00000004493	ENSPLAP00000008735	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Endoplasmic reticulum-golgi intermediate compartment 1.	0.965
gtpbp3	ergic3	ENSPLAP00000004493	ENSPLAP00000001881	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	ERGIC and golgi 3.	0.965
gtpbp3	mto1	ENSPLAP00000004493	ENSPLAP00000027946	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial tRNA translation optimization 1.	0.995
gtpbp3	trmu	ENSPLAP00000004493	ENSPLAP00000006301	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.944