STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh16Cadherin 16, KSP-cadherin. (773 aa)    
Predicted Functional Partners:
CTNND1
Catenin delta 1.
    
 0.826
LOC106946188
Catenin (cadherin-associated protein), delta 1.
    
 0.826
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.824
LOC106963833
Junction plakoglobin a.
    
 0.759
ENSPLAP00000024989
Uncharacterized protein.
    
 0.756
LOC106953978
Uncharacterized protein.
    
 0.734
ENSPLAP00000001719
Uncharacterized protein.
    
 0.711
ENSPLAP00000001734
Uncharacterized protein.
    
 0.711
ENSPLAP00000012899
Uncharacterized protein.
    
 0.711
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.703
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.