STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
medagUncharacterized protein. (212 aa)    
Predicted Functional Partners:
LOC106940770
Caudal type homeobox 4.
      
 0.510
B3GLCT
Beta 3-glucosyltransferase.
      
 0.424
LOC106950193
Beta 3-glucosyltransferase a.
      
 0.424
prdm5
Zinc finger protein.
      
 0.420
ENSPLAP00000002129
Opsin 8, group member b; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.416
ENSPLAP00000009523
Opsin 5; Belongs to the G-protein coupled receptor 1 family.
      
 0.416
LOC106938863
Homeobox domain-containing protein.
      
 0.404
LOC106946870
Homeobox domain-containing protein.
      
 0.404
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.