LOC106952075 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HNRNPA3	LOC106952075	ENSPLAP00000006639	ENSPLAP00000006372	Heterogeneous nuclear ribonucleoprotein A3.	Purine-rich element binding protein Aa.	0.593
HNRNPA3	LOC106956221	ENSPLAP00000006639	ENSPLAP00000028859	Heterogeneous nuclear ribonucleoprotein A3.	RNA binding motif protein 4.1.	0.413
HNRNPA3	adarb2	ENSPLAP00000006639	ENSPLAP00000006774	Heterogeneous nuclear ribonucleoprotein A3.	Adenosine deaminase RNA specific B2 (inactive).	0.739
HNRNPA3	fmr1	ENSPLAP00000006639	ENSPLAP00000021405	Heterogeneous nuclear ribonucleoprotein A3.	Fragile X mental retardation 1.	0.490
LOC106949442	LOC106952075	ENSPLAP00000028025	ENSPLAP00000006372	Chemokine (C-C motif) receptor 8.1; Belongs to the G-protein coupled receptor 1 family.	Purine-rich element binding protein Aa.	0.566
LOC106952075	HNRNPA3	ENSPLAP00000006372	ENSPLAP00000006639	Purine-rich element binding protein Aa.	Heterogeneous nuclear ribonucleoprotein A3.	0.593
LOC106952075	LOC106949442	ENSPLAP00000006372	ENSPLAP00000028025	Purine-rich element binding protein Aa.	Chemokine (C-C motif) receptor 8.1; Belongs to the G-protein coupled receptor 1 family.	0.566
LOC106952075	LOC106956221	ENSPLAP00000006372	ENSPLAP00000028859	Purine-rich element binding protein Aa.	RNA binding motif protein 4.1.	0.664
LOC106952075	LOC106956330	ENSPLAP00000006372	ENSPLAP00000026815	Purine-rich element binding protein Aa.	Uncharacterized protein.	0.643
LOC106952075	PURB	ENSPLAP00000006372	ENSPLAP00000027800	Purine-rich element binding protein Aa.	Purine rich element binding protein B.	0.643
LOC106952075	adarb2	ENSPLAP00000006372	ENSPLAP00000006774	Purine-rich element binding protein Aa.	Adenosine deaminase RNA specific B2 (inactive).	0.636
LOC106952075	e2f1	ENSPLAP00000006372	ENSPLAP00000011156	Purine-rich element binding protein Aa.	E2F transcription factor 1.	0.576
LOC106952075	fmr1	ENSPLAP00000006372	ENSPLAP00000021405	Purine-rich element binding protein Aa.	Fragile X mental retardation 1.	0.542
LOC106952075	rfc3	ENSPLAP00000006372	ENSPLAP00000016829	Purine-rich element binding protein Aa.	Replication factor C (activator 1) 3.	0.588
LOC106952075	zcrb1	ENSPLAP00000006372	ENSPLAP00000021159	Purine-rich element binding protein Aa.	Zinc finger CCHC-type and RNA binding motif 1.	0.612
LOC106956221	HNRNPA3	ENSPLAP00000028859	ENSPLAP00000006639	RNA binding motif protein 4.1.	Heterogeneous nuclear ribonucleoprotein A3.	0.413
LOC106956221	LOC106952075	ENSPLAP00000028859	ENSPLAP00000006372	RNA binding motif protein 4.1.	Purine-rich element binding protein Aa.	0.664
LOC106956221	LOC106956330	ENSPLAP00000028859	ENSPLAP00000026815	RNA binding motif protein 4.1.	Uncharacterized protein.	0.432
LOC106956221	PURB	ENSPLAP00000028859	ENSPLAP00000027800	RNA binding motif protein 4.1.	Purine rich element binding protein B.	0.432
LOC106956330	LOC106952075	ENSPLAP00000026815	ENSPLAP00000006372	Uncharacterized protein.	Purine-rich element binding protein Aa.	0.643