LOC106963002 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106963002

Uncharacterized protein. (341 aa)

Predicted Functional Partners:

nsun4

0.970

nsun3

0.967

mrpl2

0.888

mtg1

0.860

MRPL58

0.858

malsu1

0.852

mrm2

0.848

mtg2

0.846

mrpl12

0.835

mrps18a

0.823

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106963002	MRPL58	ENSPLAP00000006378	ENSPLAP00000013385	Uncharacterized protein.	Mitochondrial ribosomal protein L58.	0.858
LOC106963002	malsu1	ENSPLAP00000006378	ENSPLAP00000027291	Uncharacterized protein.	Si:zfos-1192g2.3.	0.852
LOC106963002	mrm2	ENSPLAP00000006378	ENSPLAP00000025569	Uncharacterized protein.	Mitochondrial rRNA methyltransferase 2.	0.848
LOC106963002	mrpl12	ENSPLAP00000006378	ENSPLAP00000001578	Uncharacterized protein.	Mitochondrial ribosomal protein L12.	0.835
LOC106963002	mrpl2	ENSPLAP00000006378	ENSPLAP00000022305	Uncharacterized protein.	Mitochondrial ribosomal protein L2.	0.888
LOC106963002	mrps18a	ENSPLAP00000006378	ENSPLAP00000008533	Uncharacterized protein.	Mitochondrial ribosomal protein S18A.	0.823
LOC106963002	mtg1	ENSPLAP00000006378	ENSPLAP00000015618	Uncharacterized protein.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.860
LOC106963002	mtg2	ENSPLAP00000006378	ENSPLAP00000004189	Uncharacterized protein.	Mitochondrial ribosome-associated GTPase 2.	0.846
LOC106963002	nsun3	ENSPLAP00000006378	ENSPLAP00000023204	Uncharacterized protein.	NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.967
LOC106963002	nsun4	ENSPLAP00000006378	ENSPLAP00000003662	Uncharacterized protein.	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.970
MRPL58	LOC106963002	ENSPLAP00000013385	ENSPLAP00000006378	Mitochondrial ribosomal protein L58.	Uncharacterized protein.	0.858
MRPL58	malsu1	ENSPLAP00000013385	ENSPLAP00000027291	Mitochondrial ribosomal protein L58.	Si:zfos-1192g2.3.	0.958
MRPL58	mrm2	ENSPLAP00000013385	ENSPLAP00000025569	Mitochondrial ribosomal protein L58.	Mitochondrial rRNA methyltransferase 2.	0.793
MRPL58	mrpl12	ENSPLAP00000013385	ENSPLAP00000001578	Mitochondrial ribosomal protein L58.	Mitochondrial ribosomal protein L12.	0.984
MRPL58	mrpl2	ENSPLAP00000013385	ENSPLAP00000022305	Mitochondrial ribosomal protein L58.	Mitochondrial ribosomal protein L2.	0.981
MRPL58	mrps18a	ENSPLAP00000013385	ENSPLAP00000008533	Mitochondrial ribosomal protein L58.	Mitochondrial ribosomal protein S18A.	0.915
MRPL58	mtg1	ENSPLAP00000013385	ENSPLAP00000015618	Mitochondrial ribosomal protein L58.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.873
MRPL58	mtg2	ENSPLAP00000013385	ENSPLAP00000004189	Mitochondrial ribosomal protein L58.	Mitochondrial ribosome-associated GTPase 2.	0.855
MRPL58	nsun3	ENSPLAP00000013385	ENSPLAP00000023204	Mitochondrial ribosomal protein L58.	NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.661
MRPL58	nsun4	ENSPLAP00000013385	ENSPLAP00000003662	Mitochondrial ribosomal protein L58.	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.661