Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sfswapSplicing factor SWAP. (931 aa)    
Predicted Functional Partners:
cfap20
Cilia and flagella associated protein 20.
    
   0.912
ENSPLAP00000021729
Uncharacterized protein.
      
 0.874
rbm17
RNA binding motif protein 17.
    
   0.820
sf3a3
Splicing factor 3a, subunit 3.
      
 0.717
sf3a2
Splicing factor 3a, subunit 2.
      
 0.713
LOC106950533
Calcium homeostasis endoplasmic reticulum protein.
   
  
 0.711
LOC106942097
Serine/arginine repetitive matrix 1.
   
 
 0.693
srrm1
Serine and arginine repetitive matrix 1.
   
 
 0.693
ncmap
Uncharacterized protein.
   
 
 0.685
uhmk1
U2AF homology motif (UHM) kinase 1.
      
 0.658
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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