Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106957839Lysozyme g. (178 aa)    
Predicted Functional Partners:
faap24
FA core complex associated protein 24.
    
   0.761
adamtsl2
ADAMTS-like 2.
    
 0.525
mrpl30
Mitochondrial ribosomal protein L30.
    
 
 0.502
txndc9
Thioredoxin domain containing 9.
    
 0.457
ENSPLAP00000011287
Glutamate receptor, metabotropic 2b.
      
 0.412
grm2
Glutamate receptor, metabotropic 2a.
      
 0.412
mitd1
MIT, microtubule interacting and transport, domain containing 1.
      
 0.412
grm3
Glutamate receptor, metabotropic 3.
      
 0.412
tmem121
Transmembrane protein 121Ab.
      
 0.411
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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