STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106951909PKD domain-containing protein. (1213 aa)    
Predicted Functional Partners:
ENSPLAP00000016759
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.698
LOC106946547
Sortilin.
    
0.685
sort1
Sortilin.
    
0.685
ENSPLAP00000016975
Sortilin.
    
0.671
igf2r
Insulin-like growth factor 2 receptor.
    
 0.654
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.648
psmb1
Proteasome subunit beta.
    
   0.587
psma1
Proteasome subunit alpha type.
    
   0.587
psma4
Proteasome subunit alpha type.
    
   0.587
LOC106960711
Proteasome subunit alpha type.
    
   0.587
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.