rem2 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rem2

RAS (RAD and GEM)-like GTP binding 2. (307 aa)

Predicted Functional Partners:

LOC106954136

0.866

ENSPLAP00000017806

0.866

ENSPLAP00000030866

0.866

ENSPLAP00000030875

0.866

itsn1

0.817

LOC106945532

0.808

met

0.785

LOC106949456

0.785

mst1r

0.785

ENSPLAP00000001148

0.782

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000001148	LOC106945532	ENSPLAP00000001148	ENSPLAP00000028558	PDZ domain-containing protein.	Si:ch73-335l21.4.	0.881
ENSPLAP00000001148	LOC106949456	ENSPLAP00000001148	ENSPLAP00000030032	PDZ domain-containing protein.	Macrophage stimulating 1 receptor a.	0.406
ENSPLAP00000001148	met	ENSPLAP00000001148	ENSPLAP00000026056	PDZ domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.406
ENSPLAP00000001148	mst1r	ENSPLAP00000001148	ENSPLAP00000030460	PDZ domain-containing protein.	Macrophage stimulating 1 receptor b.	0.406
ENSPLAP00000001148	rem2	ENSPLAP00000001148	ENSPLAP00000006596	PDZ domain-containing protein.	RAS (RAD and GEM)-like GTP binding 2.	0.782
ENSPLAP00000017806	ENSPLAP00000030866	ENSPLAP00000017806	ENSPLAP00000030866	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSPLAP00000017806	ENSPLAP00000030875	ENSPLAP00000017806	ENSPLAP00000030875	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPLAP00000017806	LOC106945532	ENSPLAP00000017806	ENSPLAP00000028558	Uncharacterized protein.	Si:ch73-335l21.4.	0.434
ENSPLAP00000017806	LOC106949456	ENSPLAP00000017806	ENSPLAP00000030032	Uncharacterized protein.	Macrophage stimulating 1 receptor a.	0.734
ENSPLAP00000017806	LOC106954136	ENSPLAP00000017806	ENSPLAP00000012841	Uncharacterized protein.	Intersectin 2b.	0.993
ENSPLAP00000017806	itsn1	ENSPLAP00000017806	ENSPLAP00000002478	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.992
ENSPLAP00000017806	met	ENSPLAP00000017806	ENSPLAP00000026056	Uncharacterized protein.	MET proto-oncogene, receptor tyrosine kinase.	0.734
ENSPLAP00000017806	mst1r	ENSPLAP00000017806	ENSPLAP00000030460	Uncharacterized protein.	Macrophage stimulating 1 receptor b.	0.734
ENSPLAP00000017806	rem2	ENSPLAP00000017806	ENSPLAP00000006596	Uncharacterized protein.	RAS (RAD and GEM)-like GTP binding 2.	0.866
ENSPLAP00000030866	ENSPLAP00000017806	ENSPLAP00000030866	ENSPLAP00000017806	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSPLAP00000030866	ENSPLAP00000030875	ENSPLAP00000030866	ENSPLAP00000030875	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSPLAP00000030866	LOC106945532	ENSPLAP00000030866	ENSPLAP00000028558	Uncharacterized protein.	Si:ch73-335l21.4.	0.434
ENSPLAP00000030866	LOC106949456	ENSPLAP00000030866	ENSPLAP00000030032	Uncharacterized protein.	Macrophage stimulating 1 receptor a.	0.734
ENSPLAP00000030866	LOC106954136	ENSPLAP00000030866	ENSPLAP00000012841	Uncharacterized protein.	Intersectin 2b.	0.993
ENSPLAP00000030866	itsn1	ENSPLAP00000030866	ENSPLAP00000002478	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.992