STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
khdc4Uncharacterized protein. (631 aa)    
Predicted Functional Partners:
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
  
 0.606
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.582
luc7l
LUC7-like (S. cerevisiae).
   
  
 0.498
LOC106960367
Zgc:158803.
   
  
 0.498
sf1
Splicing factor 1.
    
 
 0.486
LOC106950533
Calcium homeostasis endoplasmic reticulum protein.
      
 0.482
LOC106950859
Far upstream element (FUSE) binding protein 3.
      
 0.422
LOC106963003
Uncharacterized protein.
      
 0.422
incenp
Uncharacterized protein.
      
 0.414
wbp4
Uncharacterized protein.
      
 0.408
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.