Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000006641Uncharacterized protein. (76 aa)    
Predicted Functional Partners:
ssbp1
Single-stranded DNA binding protein 1.
   
 
 0.905
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.812
cmc2
COX assembly mitochondrial protein.
   
 
 0.807
cmc4
Uncharacterized protein.
    
 0.785
LOC106946322
Cytochrome c oxidase assembly factor 6.
   
 
 0.767
pum2
Pumilio RNA-binding family member 2.
    
   0.758
pum1
Pumilio RNA-binding family member 1.
    
   0.758
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.721
lyrm7
LYR motif containing 7; Belongs to the complex I LYR family.
      
 0.714
LOC106948580
Cytochrome c oxidase assembly factor COX19.
     
 0.710
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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