fbf1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
POLR2E	fbf1	ENSPLAP00000011389	ENSPLAP00000006752	RNA polymerase II subunit E.	Uncharacterized protein.	0.891
POLR2E	polr2a	ENSPLAP00000011389	ENSPLAP00000005384	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR2E	polr2b	ENSPLAP00000011389	ENSPLAP00000000044	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR2E	polr2c	ENSPLAP00000011389	ENSPLAP00000015761	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.999
POLR2E	polr2d	ENSPLAP00000011389	ENSPLAP00000013683	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.999
POLR2E	polr2f	ENSPLAP00000011389	ENSPLAP00000000201	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
POLR2E	polr2g	ENSPLAP00000011389	ENSPLAP00000017993	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.999
POLR2E	polr2i	ENSPLAP00000011389	ENSPLAP00000024445	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
POLR2E	polr2l	ENSPLAP00000011389	ENSPLAP00000008201	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.999
POLR2E	rpap2	ENSPLAP00000011389	ENSPLAP00000003830	RNA polymerase II subunit E.	RNA polymerase II associated protein 2.	0.996
fbf1	POLR2E	ENSPLAP00000006752	ENSPLAP00000011389	Uncharacterized protein.	RNA polymerase II subunit E.	0.891
fbf1	polr2a	ENSPLAP00000006752	ENSPLAP00000005384	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.940
fbf1	polr2b	ENSPLAP00000006752	ENSPLAP00000000044	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.918
fbf1	polr2c	ENSPLAP00000006752	ENSPLAP00000015761	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.898
fbf1	polr2d	ENSPLAP00000006752	ENSPLAP00000013683	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.890
fbf1	polr2f	ENSPLAP00000006752	ENSPLAP00000000201	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.891
fbf1	polr2g	ENSPLAP00000006752	ENSPLAP00000017993	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.889
fbf1	polr2i	ENSPLAP00000006752	ENSPLAP00000024445	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.893
fbf1	polr2l	ENSPLAP00000006752	ENSPLAP00000008201	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.887
fbf1	rpap2	ENSPLAP00000006752	ENSPLAP00000003830	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.924