STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106959166Myosin_tail_1 domain-containing protein. (1168 aa)    
Predicted Functional Partners:
gata4
GATA binding protein 4.
    
 0.907
LOC106961235
Tight junction protein 1a; Belongs to the MAGUK family.
    
  0.906
LOC106937846
Tight junction protein 1b; Belongs to the MAGUK family.
    
  0.906
ENSPLAP00000020292
Uncharacterized protein.
    
 0.853
ranbp2
RAN binding protein 2.
    
 0.704
gata5
GATA binding protein 5.
    
 0.699
gata6
GATA binding protein 6.
    
 0.699
rbbp5
Retinoblastoma binding protein 5.
    
 0.686
LOC106964935
GATA binding protein 1a.
    
 0.679
tjp2
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
    
  0.676
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.