STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106961857H2A histone family, member Y; Belongs to the histone H2A family. (368 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
  
 0.998
aifm1
Apoptosis inducing factor mitochondrion associated 1.
  
 0.919
HDAC3
Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.908
hdac11
Histone deacetylase 11.
   
 0.906
LOC106956949
Lysine (K)-specific demethylase 6A, like.
  
 0.906
kdm6a
Lysine (K)-specific demethylase 6A.
  
 0.906
ENSPLAP00000026854
Histone deacetylase 12.
   
 0.906
LOC106949253
Lysine (K)-specific demethylase 6B, b.
  
 0.902
LOC106935492
Lysine (K)-specific demethylase 6B, a.
  
 0.902
ppia
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.888
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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