Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106953622T-box transcription factor Ta. (421 aa)    
Predicted Functional Partners:
mixl1
Mix paired-like homeobox.
   
 0.914
foxa2
Forkhead box A2.
    
 0.873
LOC106956667
Notochord homeobox.
    
 0.871
LOC106948175
POU domain protein.
   
 0.843
gata4
GATA binding protein 4.
    
 0.829
bmp4
Bone morphogenetic protein 4.
     
 0.823
gata6
GATA binding protein 6.
    
 0.808
sox17
SRY-box transcription factor 17.
    
 0.793
foxh1
Forkhead box H1.
   
 
 0.765
ENSPLAP00000011711
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.729
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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