ddx10 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ddx10

RNA helicase. (809 aa)

Predicted Functional Partners:

esf1

0.998

ENSPLAP00000011414

0.998

ddx18

0.996

utp3

0.993

nom1

0.993

nol6

0.991

nop14

0.990

abt1

0.989

rrp36

0.989

utp18

0.987

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000011414	abt1	ENSPLAP00000011414	ENSPLAP00000013206	Uncharacterized protein.	Activator of basal transcription 1.	0.885
ENSPLAP00000011414	ddx10	ENSPLAP00000011414	ENSPLAP00000006825	Uncharacterized protein.	RNA helicase.	0.998
ENSPLAP00000011414	ddx18	ENSPLAP00000011414	ENSPLAP00000003670	Uncharacterized protein.	RNA helicase.	0.991
ENSPLAP00000011414	esf1	ENSPLAP00000011414	ENSPLAP00000004697	Uncharacterized protein.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.957
ENSPLAP00000011414	nol6	ENSPLAP00000011414	ENSPLAP00000019355	Uncharacterized protein.	Nucleolar protein 6.	0.999
ENSPLAP00000011414	nom1	ENSPLAP00000011414	ENSPLAP00000022900	Uncharacterized protein.	Nucleolar protein with MIF4G domain 1.	0.934
ENSPLAP00000011414	nop14	ENSPLAP00000011414	ENSPLAP00000008444	Uncharacterized protein.	NOP14 nucleolar protein homolog (yeast).	0.999
ENSPLAP00000011414	rrp36	ENSPLAP00000011414	ENSPLAP00000018959	Uncharacterized protein.	Ribosomal RNA processing 36.	0.918
ENSPLAP00000011414	utp18	ENSPLAP00000011414	ENSPLAP00000008673	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
ENSPLAP00000011414	utp3	ENSPLAP00000011414	ENSPLAP00000004005	Uncharacterized protein.	UTP3 small subunit processome component.	0.999
abt1	ENSPLAP00000011414	ENSPLAP00000013206	ENSPLAP00000011414	Activator of basal transcription 1.	Uncharacterized protein.	0.885
abt1	ddx10	ENSPLAP00000013206	ENSPLAP00000006825	Activator of basal transcription 1.	RNA helicase.	0.989
abt1	ddx18	ENSPLAP00000013206	ENSPLAP00000003670	Activator of basal transcription 1.	RNA helicase.	0.966
abt1	esf1	ENSPLAP00000013206	ENSPLAP00000004697	Activator of basal transcription 1.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.985
abt1	nom1	ENSPLAP00000013206	ENSPLAP00000022900	Activator of basal transcription 1.	Nucleolar protein with MIF4G domain 1.	0.965
abt1	nop14	ENSPLAP00000013206	ENSPLAP00000008444	Activator of basal transcription 1.	NOP14 nucleolar protein homolog (yeast).	0.988
abt1	rrp36	ENSPLAP00000013206	ENSPLAP00000018959	Activator of basal transcription 1.	Ribosomal RNA processing 36.	0.997
abt1	utp18	ENSPLAP00000013206	ENSPLAP00000008673	Activator of basal transcription 1.	WD_REPEATS_REGION domain-containing protein.	0.982
abt1	utp3	ENSPLAP00000013206	ENSPLAP00000004005	Activator of basal transcription 1.	UTP3 small subunit processome component.	0.520
ddx10	ENSPLAP00000011414	ENSPLAP00000006825	ENSPLAP00000011414	RNA helicase.	Uncharacterized protein.	0.998