Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSPLAP00000006833Uncharacterized protein. (256 aa)    
Predicted Functional Partners:
LOC106935102
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.920
LOC106943806
Proteasome subunit beta 12.
   
 0.747
ENSPLAP00000027208
Proteasome subunit beta 9a.
   
 0.747
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
   
 0.741
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
      
 0.710
LOC106941575
Proteasome subunit beta.
   
 0.696
LOC106936274
Calreticulin.
   
 0.689
LOC106951082
Calreticulin.
   
 0.689
pdia3
Protein disulfide-isomerase.
   
 0.664
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
   
 0.664
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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