cdc73 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106951216	POLR2E	ENSPLAP00000001239	ENSPLAP00000011389	WD repeat domain 61.	RNA polymerase II subunit E.	0.420
LOC106951216	cdc73	ENSPLAP00000001239	ENSPLAP00000006835	WD repeat domain 61.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.999
LOC106951216	ctr9	ENSPLAP00000001239	ENSPLAP00000029172	WD repeat domain 61.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
LOC106951216	leo1	ENSPLAP00000001239	ENSPLAP00000005905	WD repeat domain 61.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
LOC106951216	paf1	ENSPLAP00000001239	ENSPLAP00000017653	WD repeat domain 61.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
LOC106951216	polr2h	ENSPLAP00000001239	ENSPLAP00000000004	WD repeat domain 61.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.481
LOC106951216	rtf1	ENSPLAP00000001239	ENSPLAP00000018455	WD repeat domain 61.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.996
LOC106951216	supt16h	ENSPLAP00000001239	ENSPLAP00000029090	WD repeat domain 61.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.737
LOC106951216	supt4h1	ENSPLAP00000001239	ENSPLAP00000009695	WD repeat domain 61.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.499
POLR2E	LOC106951216	ENSPLAP00000011389	ENSPLAP00000001239	RNA polymerase II subunit E.	WD repeat domain 61.	0.420
POLR2E	cdc73	ENSPLAP00000011389	ENSPLAP00000006835	RNA polymerase II subunit E.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.988
POLR2E	ctr9	ENSPLAP00000011389	ENSPLAP00000029172	RNA polymerase II subunit E.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.958
POLR2E	leo1	ENSPLAP00000011389	ENSPLAP00000005905	RNA polymerase II subunit E.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.908
POLR2E	paf1	ENSPLAP00000011389	ENSPLAP00000017653	RNA polymerase II subunit E.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.897
POLR2E	polr2a	ENSPLAP00000011389	ENSPLAP00000005384	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR2E	polr2h	ENSPLAP00000011389	ENSPLAP00000000004	RNA polymerase II subunit E.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
POLR2E	rtf1	ENSPLAP00000011389	ENSPLAP00000018455	RNA polymerase II subunit E.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.785
POLR2E	supt16h	ENSPLAP00000011389	ENSPLAP00000029090	RNA polymerase II subunit E.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.954
POLR2E	supt4h1	ENSPLAP00000011389	ENSPLAP00000009695	RNA polymerase II subunit E.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.998
cdc73	LOC106951216	ENSPLAP00000006835	ENSPLAP00000001239	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	WD repeat domain 61.	0.999