chmp4b protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000025956	chmp1a	ENSPLAP00000025956	ENSPLAP00000016689	Uncharacterized protein.	Charged multivesicular body protein 1A.	0.904
ENSPLAP00000025956	chmp1b	ENSPLAP00000025956	ENSPLAP00000004801	Uncharacterized protein.	Chromatin modifying protein 1B.	0.901
ENSPLAP00000025956	chmp2a	ENSPLAP00000025956	ENSPLAP00000016587	Uncharacterized protein.	Charged multivesicular body protein 2A.	0.993
ENSPLAP00000025956	chmp3	ENSPLAP00000025956	ENSPLAP00000024817	Uncharacterized protein.	Charged multivesicular body protein 3.	0.944
ENSPLAP00000025956	chmp4b	ENSPLAP00000025956	ENSPLAP00000006847	Uncharacterized protein.	Charged multivesicular body protein 4Bb.	0.980
ENSPLAP00000025956	chmp7	ENSPLAP00000025956	ENSPLAP00000010086	Uncharacterized protein.	Charged multivesicular body protein 7.	0.968
ENSPLAP00000025956	pdcd6ip	ENSPLAP00000025956	ENSPLAP00000005079	Uncharacterized protein.	Programmed cell death 6 interacting protein.	0.553
ENSPLAP00000025956	snf8	ENSPLAP00000025956	ENSPLAP00000030068	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.617
ENSPLAP00000025956	vps25	ENSPLAP00000025956	ENSPLAP00000027853	Uncharacterized protein.	Vacuolar protein sorting 25 homolog.	0.617
ENSPLAP00000025956	vps36	ENSPLAP00000025956	ENSPLAP00000026566	Uncharacterized protein.	Vacuolar protein sorting 36 homolog.	0.586
chmp1a	ENSPLAP00000025956	ENSPLAP00000016689	ENSPLAP00000025956	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.904
chmp1a	chmp1b	ENSPLAP00000016689	ENSPLAP00000004801	Charged multivesicular body protein 1A.	Chromatin modifying protein 1B.	0.902
chmp1a	chmp2a	ENSPLAP00000016689	ENSPLAP00000016587	Charged multivesicular body protein 1A.	Charged multivesicular body protein 2A.	0.993
chmp1a	chmp3	ENSPLAP00000016689	ENSPLAP00000024817	Charged multivesicular body protein 1A.	Charged multivesicular body protein 3.	0.944
chmp1a	chmp4b	ENSPLAP00000016689	ENSPLAP00000006847	Charged multivesicular body protein 1A.	Charged multivesicular body protein 4Bb.	0.980
chmp1a	chmp7	ENSPLAP00000016689	ENSPLAP00000010086	Charged multivesicular body protein 1A.	Charged multivesicular body protein 7.	0.968
chmp1a	pdcd6ip	ENSPLAP00000016689	ENSPLAP00000005079	Charged multivesicular body protein 1A.	Programmed cell death 6 interacting protein.	0.553
chmp1a	snf8	ENSPLAP00000016689	ENSPLAP00000030068	Charged multivesicular body protein 1A.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.617
chmp1a	vps25	ENSPLAP00000016689	ENSPLAP00000027853	Charged multivesicular body protein 1A.	Vacuolar protein sorting 25 homolog.	0.617
chmp1a	vps36	ENSPLAP00000016689	ENSPLAP00000026566	Charged multivesicular body protein 1A.	Vacuolar protein sorting 36 homolog.	0.586