LOC106962937 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000011922	ENSPLAP00000026969	ENSPLAP00000011922	ENSPLAP00000026969	ElaC ribonuclease Z 2.	Lactamase_B_4 domain-containing protein.	0.934
ENSPLAP00000011922	LOC106962937	ENSPLAP00000011922	ENSPLAP00000006875	ElaC ribonuclease Z 2.	Uncharacterized protein.	0.691
ENSPLAP00000026969	ENSPLAP00000011922	ENSPLAP00000026969	ENSPLAP00000011922	Lactamase_B_4 domain-containing protein.	ElaC ribonuclease Z 2.	0.934
ENSPLAP00000026969	LOC106962937	ENSPLAP00000026969	ENSPLAP00000006875	Lactamase_B_4 domain-containing protein.	Uncharacterized protein.	0.691
LOC106962937	ENSPLAP00000011922	ENSPLAP00000006875	ENSPLAP00000011922	Uncharacterized protein.	ElaC ribonuclease Z 2.	0.691
LOC106962937	ENSPLAP00000026969	ENSPLAP00000006875	ENSPLAP00000026969	Uncharacterized protein.	Lactamase_B_4 domain-containing protein.	0.691
LOC106962937	LOC106964788	ENSPLAP00000006875	ENSPLAP00000020571	Uncharacterized protein.	Zgc:110269.	0.685
LOC106962937	aifm1	ENSPLAP00000006875	ENSPLAP00000009323	Uncharacterized protein.	Apoptosis inducing factor mitochondrion associated 1.	0.849
LOC106962937	elac1	ENSPLAP00000006875	ENSPLAP00000000719	Uncharacterized protein.	ElaC ribonuclease Z 1.	0.691
LOC106962937	fen1	ENSPLAP00000006875	ENSPLAP00000029880	Uncharacterized protein.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.685
LOC106962937	ptges2	ENSPLAP00000006875	ENSPLAP00000000076	Uncharacterized protein.	Prostaglandin E synthase 2-like; Belongs to the GST superfamily.	0.745
LOC106962937	pum1	ENSPLAP00000006875	ENSPLAP00000022558	Uncharacterized protein.	Pumilio RNA-binding family member 1.	0.713
LOC106962937	pum2	ENSPLAP00000006875	ENSPLAP00000000881	Uncharacterized protein.	Pumilio RNA-binding family member 2.	0.713
LOC106962937	twnk	ENSPLAP00000006875	ENSPLAP00000009277	Uncharacterized protein.	Twinkle mtDNA helicase.	0.603
LOC106964788	LOC106962937	ENSPLAP00000020571	ENSPLAP00000006875	Zgc:110269.	Uncharacterized protein.	0.685
LOC106964788	fen1	ENSPLAP00000020571	ENSPLAP00000029880	Zgc:110269.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.905
LOC106964788	twnk	ENSPLAP00000020571	ENSPLAP00000009277	Zgc:110269.	Twinkle mtDNA helicase.	0.418
aifm1	LOC106962937	ENSPLAP00000009323	ENSPLAP00000006875	Apoptosis inducing factor mitochondrion associated 1.	Uncharacterized protein.	0.849
elac1	LOC106962937	ENSPLAP00000000719	ENSPLAP00000006875	ElaC ribonuclease Z 1.	Uncharacterized protein.	0.691
fen1	LOC106962937	ENSPLAP00000029880	ENSPLAP00000006875	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.685