Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000006899Integrase catalytic domain-containing protein. (309 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.716
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.663
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.660
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.595
LOC106952289
Retinoblastoma binding protein 4.
    
 0.594
ENSPLAP00000014870
CAF1C_H4-bd domain-containing protein.
    
 0.594
tfdp1
Transcription factor.
    
  0.516
LOC106955228
Retinoblastoma-like 2 (p130).
    
  0.496
rbl1
Retinoblastoma-like 1 (p107).
    
  0.496
e2f4
E2F transcription factor 4.
    
 0.476
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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