STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106935117B30.2/SPRY domain-containing protein. (280 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.556
ENSPLAP00000001468
Ubiquitin-like domain-containing protein.
  
 
  0.526
ENSPLAP00000008097
Ubiquitin-like domain-containing protein.
  
 
  0.510
ube2l3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.467
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.442
zfand4
Zinc finger, AN1-type domain 4.
    
  0.441
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
  0.433
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
  
  0.427
cd74
CD74 molecule, major histocompatibility complex, class II invariant chain a.
  
   0.424
LOC106952694
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.421
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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