STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106937721Uncharacterized protein. (1615 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.974
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.973
LOC106954370
FIP1 like 1b (S. cerevisiae).
    
 0.971
UBE3D
Ubiquitin protein ligase E3D.
    
 0.948
LOC106943331
WD repeat domain 33.
   
 0.939
LOC106935184
WD_REPEATS_REGION domain-containing protein.
   
 0.939
ENSPLAP00000018148
CPSF_A domain-containing protein.
    
 0.936
ENSPLAP00000018171
Uncharacterized protein.
    
 0.936
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 0.928
ENSPLAP00000027613
Uncharacterized protein.
    
 0.925
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.