STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106942904Pleckstrin homology domain containing, family G (with RhoGef domain) member 5b. (705 aa)    
Predicted Functional Partners:
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.875
tradd
Tnfrsf1a-associated via death domain.
    
 0.871
ENSPLAP00000029102
Uncharacterized protein.
   
 0.837
LOC106935001
Tumor necrosis factor a (TNF superfamily, member 2); Belongs to the tumor necrosis factor family.
    
 0.825
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
    
 0.793
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.762
LOC106944810
Protein kinase domain-containing protein.
   
 0.762
sharpin
SHANK-associated RH domain interacting protein.
    
 0.749
LOC106936960
Tumor necrosis factor b (TNF superfamily, member 2).
    
 0.749
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.748
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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