LOC106956904 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106956904

Regulator of G protein signaling 5a. (183 aa)

Predicted Functional Partners:

LOC106946560

0.749

LOC106949452

0.749

LOC106955271

0.729

LOC106955270

0.725

LOC106947790

0.725

LOC106963571

0.725

LOC106963572

0.725

ENSPLAP00000008549

0.716

apc2

0.716

rgs3

0.700

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000008549	LOC106956904	ENSPLAP00000008549	ENSPLAP00000010417	APC_N_CC domain-containing protein.	Regulator of G protein signaling 5a.	0.716
ENSPLAP00000008549	rgs3	ENSPLAP00000008549	ENSPLAP00000001359	APC_N_CC domain-containing protein.	Si:ch211-154e10.1.	0.719
LOC106946560	LOC106947790	ENSPLAP00000002077	ENSPLAP00000005857	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.487
LOC106946560	LOC106949452	ENSPLAP00000002077	ENSPLAP00000030094	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.966
LOC106946560	LOC106955270	ENSPLAP00000002077	ENSPLAP00000000830	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.488
LOC106946560	LOC106955271	ENSPLAP00000002077	ENSPLAP00000000824	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.436
LOC106946560	LOC106956904	ENSPLAP00000002077	ENSPLAP00000010417	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Regulator of G protein signaling 5a.	0.749
LOC106946560	LOC106963571	ENSPLAP00000002077	ENSPLAP00000015560	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.487
LOC106946560	LOC106963572	ENSPLAP00000002077	ENSPLAP00000029366	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.489
LOC106946560	rgs3	ENSPLAP00000002077	ENSPLAP00000001359	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Si:ch211-154e10.1.	0.776
LOC106947790	LOC106946560	ENSPLAP00000005857	ENSPLAP00000002077	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.487
LOC106947790	LOC106949452	ENSPLAP00000005857	ENSPLAP00000030094	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.486
LOC106947790	LOC106955271	ENSPLAP00000005857	ENSPLAP00000000824	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.658
LOC106947790	LOC106956904	ENSPLAP00000005857	ENSPLAP00000010417	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 5a.	0.725
LOC106947790	LOC106963571	ENSPLAP00000005857	ENSPLAP00000015560	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.887
LOC106947790	rgs3	ENSPLAP00000005857	ENSPLAP00000001359	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Si:ch211-154e10.1.	0.754
LOC106949452	LOC106946560	ENSPLAP00000030094	ENSPLAP00000002077	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.966
LOC106949452	LOC106947790	ENSPLAP00000030094	ENSPLAP00000005857	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.486
LOC106949452	LOC106955270	ENSPLAP00000030094	ENSPLAP00000000830	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.486
LOC106949452	LOC106955271	ENSPLAP00000030094	ENSPLAP00000000824	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.434