STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106958112HERPUD family member 2. (326 aa)    
Predicted Functional Partners:
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.544
amfr
Autocrine motility factor receptor b.
   
 
 0.539
LOC106936789
Activating transcription factor 4a.
   
 
 0.477
LOC106964606
Activating transcription factor 4b.
   
 
 0.427
tyro3
TYRO3 protein tyrosine kinase.
      
 0.414
oip5
Mis18 domain-containing protein.
      
 0.414
ENSPLAP00000017996
RING-type domain-containing protein.
    
 
 0.406
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.