LOC106945639 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106945639

BCL2 interacting protein like. (305 aa)

Predicted Functional Partners:

bcl2

0.544

klhl8

0.541

arhgap1

0.520

ctu2

0.511

dcp1b

0.508

aox1

0.494

xdh

0.494

CDC42

0.486

LOC106964683

0.486

vcpip1

0.485

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC106945639	ENSPLAP00000001204	ENSPLAP00000011809	Cell division cycle 42.	BCL2 interacting protein like.	0.486
CDC42	arhgap1	ENSPLAP00000001204	ENSPLAP00000029975	Cell division cycle 42.	Uncharacterized protein.	0.979
LOC106945639	CDC42	ENSPLAP00000011809	ENSPLAP00000001204	BCL2 interacting protein like.	Cell division cycle 42.	0.486
LOC106945639	LOC106964683	ENSPLAP00000011809	ENSPLAP00000021331	BCL2 interacting protein like.	Cell division cycle 42.	0.486
LOC106945639	aox1	ENSPLAP00000011809	ENSPLAP00000020044	BCL2 interacting protein like.	Aldehyde oxidase 6.	0.494
LOC106945639	arhgap1	ENSPLAP00000011809	ENSPLAP00000029975	BCL2 interacting protein like.	Uncharacterized protein.	0.520
LOC106945639	bcl2	ENSPLAP00000011809	ENSPLAP00000010242	BCL2 interacting protein like.	BCL2 apoptosis regulator b.	0.544
LOC106945639	ctu2	ENSPLAP00000011809	ENSPLAP00000016523	BCL2 interacting protein like.	Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with CTU1/ATPBD3 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	0.511
LOC106945639	dcp1b	ENSPLAP00000011809	ENSPLAP00000021833	BCL2 interacting protein like.	Decapping mRNA 1B.	0.508
LOC106945639	klhl8	ENSPLAP00000011809	ENSPLAP00000010189	BCL2 interacting protein like.	Kelch-like family member 8.	0.541
LOC106945639	vcpip1	ENSPLAP00000011809	ENSPLAP00000022683	BCL2 interacting protein like.	Valosin containing protein (p97)/p47 complex interacting protein 1.	0.485
LOC106945639	xdh	ENSPLAP00000011809	ENSPLAP00000023396	BCL2 interacting protein like.	Xanthine dehydrogenase.	0.494
LOC106964683	LOC106945639	ENSPLAP00000021331	ENSPLAP00000011809	Cell division cycle 42.	BCL2 interacting protein like.	0.486
LOC106964683	arhgap1	ENSPLAP00000021331	ENSPLAP00000029975	Cell division cycle 42.	Uncharacterized protein.	0.979
aox1	LOC106945639	ENSPLAP00000020044	ENSPLAP00000011809	Aldehyde oxidase 6.	BCL2 interacting protein like.	0.494
arhgap1	CDC42	ENSPLAP00000029975	ENSPLAP00000001204	Uncharacterized protein.	Cell division cycle 42.	0.979
arhgap1	LOC106945639	ENSPLAP00000029975	ENSPLAP00000011809	Uncharacterized protein.	BCL2 interacting protein like.	0.520
arhgap1	LOC106964683	ENSPLAP00000029975	ENSPLAP00000021331	Uncharacterized protein.	Cell division cycle 42.	0.979
bcl2	LOC106945639	ENSPLAP00000010242	ENSPLAP00000011809	BCL2 apoptosis regulator b.	BCL2 interacting protein like.	0.544
ctu2	LOC106945639	ENSPLAP00000016523	ENSPLAP00000011809	Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with CTU1/ATPBD3 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	BCL2 interacting protein like.	0.511