STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106952808Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2094 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
 0.740
whrn
Whirlin a.
    
 0.716
LOC106951548
Whirlin b.
    
 0.716
LOC106949104
Usher syndrome 1Ga (autosomal recessive).
   
 0.696
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.696
ush1g
Usher syndrome 1Gb (autosomal recessive).
   
 0.696
neo1
Neogenin 1.
    
  0.642
ENSPLAP00000022093
Ig-like domain-containing protein.
    
  0.642
LOC106964148
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.613
LOC106954291
Immunoglobulin superfamily, DCC subclass, member 4.
    
  0.611
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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